Will a distance education course (at B.Sc. level) be problematic to get admission in a regular M.Sc. course?

I am currently pursuing B.Sc. Honors in Biotechnology (distance education course) from Sikkim Manipal University. I want to study M.Sc. in Bioinformatics later. Will I face problems in admission to regular colleges or universities just because my B.Sc. is a distance education course instead of a regular course?